Transcript: lnc-AKIP1-2:1

Basic information

LNCipedia transcript ID: lnc-AKIP1-2:1 
LNCipedia gene ID: lnc-AKIP1-2
Ensembl Gene ID: ENSG00000253973
Ensembl Transcript ID: ENST00000531592
Location (hg19): chr11:9025709-9078831
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 560 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000531592.1; RP11-467K18.2-001; OTTHUMT00000376177.2; NONHSAT017899
Alternative gene names: ENSG00000253973.2; RP11-467K18.2; OTTHUMG00000163879.2; AC079296.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 57.59% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-AKIP1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AKIP1-2:1
4.0 lnc-AKIP1-2:1
4.1 lnc-AKIP1-2:1
5.0 lnc-AKIP1-2:1
5.1 lnc-AKIP1-10:7
5.2 lnc-AKIP1-2:1