Transcript: lnc-AKIRIN1-2:1

Basic information

LNCipedia transcript ID: lnc-AKIRIN1-2:1 
LNCipedia gene ID: lnc-AKIRIN1-2
Location (hg19): chr1:39453455-39453669
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 215 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: expReg_chr1_6177_+
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -60.0055 non-coding 
CPAT coding probability 17.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AKIRIN1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AKIRIN1-2:1
4.0 lnc-AKIRIN1-2:1
4.1 lnc-AKIRIN1-2:1
5.0 lnc-AKIRIN1-2:1
5.1 lnc-PPIE-31:1
5.2 lnc-AKIRIN1-2:1