Transcript: lnc-AKR1C1-2:2

Basic information

LNCipedia transcript ID: lnc-AKR1C1-2:2 
LNCipedia gene ID: lnc-AKR1C1-2
Ensembl Gene ID: ENSG00000224251
Ensembl Transcript ID: ENST00000440414
Location (hg19): chr10:5038074-5039572
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 302 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000440414.1; RP11-499O7.7-001; OTTHUMT00000046537.1; NONHSAT011127
Alternative gene names: ENSG00000224251.1; RP11-499O7.7; OTTHUMG00000017586.1; ENSG00000224251.2; ENSG00000224251.6; AL391427.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.6032 non-coding 
CPAT coding probability 1.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AKR1C1-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AKR1C1-2:2
4.0 lnc-AKR1C1-2:2
4.1 lnc-AKR1C1-2:2
5.0 lnc-AKR1C1-2:2
5.1 lnc-NPY4R2-484:3
5.2 lnc-AKR1C1-2:2