Transcript: lnc-ALDH1B1-1:1

Basic information

LNCipedia transcript ID: lnc-ALDH1B1-1:1 
LNCipedia gene ID: lnc-ALDH1B1-1
Location (hg19): chr9:38360424-38376427
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 669 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00015669; ENST00000422554; ENST00000422554.1; RP11-113O24.3-001; OTTHUMT00000052493.1; NONHSAT131148
Alternative gene names: XLOC_007350; linc-ALDH1B1-1; ENSG00000223716; RP11-113O24.3; ENSG00000223716.1; OTTHUMG00000019939.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -370.4694 non-coding 
CPAT coding probability 7.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALDH1B1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ALDH1B1-1:1
3.1 lnc-ALDH1B1-1:1
4.0 lnc-ALDH1B1-1:1
4.1 lnc-ALDH1B1-1:1
5.0 lnc-ALDH1B1-1:1
5.1 lnc-DCAF10-8:1
5.2 lnc-ALDH1B1-1:1