Transcript: lnc-ALDH7A1-2:4

Basic information

LNCipedia transcript ID: lnc-ALDH7A1-2:4 
LNCipedia gene ID: lnc-ALDH7A1-2
Ensembl Gene ID: ENSG00000248752
Ensembl Transcript ID: ENST00000450613
Location (hg19): chr5:125412493-125615493
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 547 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009774; ENST00000450613; ENST00000450613.2; RP11-114J13.1-001; OTTHUMT00000371353.1; NONHSAT103565
Alternative gene names: XLOC_004984; linc-ZNF608-3; ENSG00000248752; RP11-114J13.1; ENSG00000248752.1; OTTHUMG00000163018.1; AC010235.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.2827 non-coding 
CPAT coding probability 0.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALDH7A1-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ALDH7A1-1:4
3.1 lnc-ALDH7A1-2:4
4.0 lnc-ALDH7A1-2:4
4.1 lnc-ALDH7A1-2:4
5.0 lnc-ALDH7A1-2:4
5.1 lnc-LOX-59:7
5.2 lnc-ALDH7A1-2:4