Transcript: lnc-ALG1L-2:12

Basic information

LNCipedia transcript ID: lnc-ALG1L-2:12 
LNCipedia gene ID: lnc-ALG1L-2
Ensembl Gene ID: ENSG00000241288
Ensembl Transcript ID: ENST00000601985
Location (hg19): chr3:125546081-125592691
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 614 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT091616; ENST00000601985.1; ENST00000601985.5
Alternative gene names: ENSG00000241288.3; RP11-379B18.5; ENSG00000241288.7; AC092902.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.6139 non-coding 
CPAT coding probability 23.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALG1L-2:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALG1L-2:12
4.0 lnc-ALG1L-2:12
4.1 lnc-ALG1L-2:12
5.0 lnc-ALG1L-2:12
5.1 lnc-SLC41A3-5:30
5.2 lnc-ALG1L-2:12