Transcript: lnc-ALG2-6:29

Basic information

LNCipedia transcript ID: lnc-ALG2-6:29 
LNCipedia gene ID: lnc-ALG2-6
Location (hg19): chr9:102117691-102131196
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 417 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT133648
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.0914 non-coding 
CPAT coding probability 3.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALG2-6:29 no no no no

Available literature

  1. Zheng (2016), BRAF-Activated Long Noncoding RNA Modulates Papillary Thyroid Carcinoma Cell Proliferation through Regulating Thyroid Stimulating Hormone Receptor., Cancer Res Treat
  2. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALG2-6:29
4.0 lnc-ALG2-6:29
4.1 lnc-ALG2-6:29
5.0 lnc-ALG2-6:29
5.1 lnc-ERP44-11:27
5.2 lnc-ALG2-6:29