Transcript: lnc-ALG2-6:36

Basic information

LNCipedia transcript ID: lnc-ALG2-6:36 
LNCipedia gene ID: lnc-ALG2-6
Location (hg19): chr9:102117622-102128798
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 506 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT133646
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.6886 non-coding 
CPAT coding probability 3.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALG2-6:36 no no no no

Available literature

  1. Zheng (2016), BRAF-Activated Long Noncoding RNA Modulates Papillary Thyroid Carcinoma Cell Proliferation through Regulating Thyroid Stimulating Hormone Receptor., Cancer Res Treat
  2. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALG2-6:36
4.0 lnc-ALG2-6:36
4.1 lnc-ALG2-6:36
5.0 lnc-ALG2-6:36
5.1 lnc-ERP44-11:33
5.2 lnc-ALG2-6:36