Transcript: lnc-ALG2-6:38

Basic information

LNCipedia transcript ID: lnc-ALG2-6:38 
LNCipedia gene ID: lnc-ALG2-6
Ensembl Gene ID: ENSG00000271086
Ensembl Transcript ID: ENST00000604237
Location (hg19): chr9:102117626-102128754
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 458 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000604237.1; ENST00000604237.5
Alternative gene names: ENSG00000271086.1; NAMA; ENSG00000271086.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -291.8561 non-coding 
CPAT coding probability 3.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALG2-6:38 no no no no

Available literature

  1. Zheng (2016), BRAF-Activated Long Noncoding RNA Modulates Papillary Thyroid Carcinoma Cell Proliferation through Regulating Thyroid Stimulating Hormone Receptor., Cancer Res Treat
  2. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALG2-6:38
4.0 lnc-ALG2-6:38
4.1 lnc-ALG2-6:38
5.0 lnc-ALG2-6:38
5.1 lnc-ERP44-11:39
5.2 lnc-ALG2-6:38