Transcript: lnc-ALKAL2-2:17

Basic information

LNCipedia transcript ID: lnc-ALKAL2-2:17 
LNCipedia gene ID: lnc-ALKAL2-2
Ensembl Gene ID: ENSG00000235779
Ensembl Transcript ID: ENST00000585783
Location (hg19): chr2:308972-314101
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 785 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT068532; ENST00000585783.1; ENST00000585783.5
Alternative gene names: ENSG00000235779.3; AC079779.5; ENSG00000235779.7; AC079779.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.397 non-coding 
CPAT coding probability 19.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALKAL2-2:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM150B-2:18
4.0 lnc-FAM150B-2:18
4.1 lnc-FAM150B-2:18
5.0 lnc-FAM150B-2:18
5.1 lnc-RAD51AP2-229:17
5.2 lnc-ALKAL2-2:17