Transcript: lnc-ALKAL2-2:19

Basic information

LNCipedia transcript ID: lnc-ALKAL2-2:19 
LNCipedia gene ID: lnc-ALKAL2-2
Ensembl Gene ID: ENSG00000235779
Ensembl Transcript ID: ENST00000587796
Location (hg19): chr2:306225-314048
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 889 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT068526; ENST00000587796.1; ENST00000587796.5
Alternative gene names: ENSG00000235779.3; AC079779.5; ENSG00000235779.7; AC079779.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.397 non-coding 
CPAT coding probability 19.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALKAL2-2:19 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM150B-2:20
4.0 lnc-FAM150B-2:20
4.1 lnc-FAM150B-2:20
5.0 lnc-FAM150B-2:20
5.1 lnc-RAD51AP2-229:19
5.2 lnc-ALKAL2-2:19