Transcript: lnc-ALKAL2-2:28

Basic information

LNCipedia transcript ID: lnc-ALKAL2-2:28 
LNCipedia gene ID: lnc-ALKAL2-2
Ensembl Gene ID: ENSG00000235779
Ensembl Transcript ID: ENST00000587073
Location (hg19): chr2:305841-308267
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 541 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000587073.5
Alternative gene names: ENSG00000235779.7; AC079779.5; AC079779.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -94.3549 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALKAL2-2:28 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-FAM150B-2:34
4.1 lnc-FAM150B-2:34
5.0 lnc-FAM150B-2:34
5.1 lnc-RAD51AP2-229:28
5.2 lnc-ALKAL2-2:28