Transcript: lnc-ALKAL2-2:29

Basic information

LNCipedia transcript ID: lnc-ALKAL2-2:29 
LNCipedia gene ID: lnc-ALKAL2-2
Location (hg19): chr2:305841-308161
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 435 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT068519; ENST00000587073.1
Alternative gene names: ENSG00000235779.3; AC079779.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.3549 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALKAL2-2:29 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM150B-2:25
4.0 lnc-FAM150B-2:25
4.1 lnc-FAM150B-2:25
5.0 lnc-FAM150B-2:25
5.1 lnc-RAD51AP2-229:29
5.2 lnc-ALKAL2-2:29