Transcript: lnc-ALKBH4-1:1

Basic information

LNCipedia transcript ID: lnc-ALKBH4-1:1 
LNCipedia gene ID: lnc-ALKBH4-1
Ensembl Gene ID: ENSG00000239480
Ensembl Transcript ID: ENST00000468165
Location (hg19): chr7:102067265-102075227
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 541 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000468165.1; RP11-514P8.2-001; OTTHUMT00000349518.1; NONHSAT122498
Alternative gene names: ENSG00000239480.1; RP11-514P8.2; OTTHUMG00000157724.1; AC073517.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.8494 non-coding 
CPAT coding probability 5.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALKBH4-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALKBH4-1:1
4.0 lnc-ALKBH4-1:1
4.1 lnc-ALKBH4-1:1
5.0 lnc-ALKBH4-1:1
5.1 lnc-ALKBH4-1:1
5.2 lnc-ALKBH4-1:1