Transcript: lnc-ALOX12B-1:1

Basic information

LNCipedia transcript ID: lnc-ALOX12B-1:1 
LNCipedia gene ID: lnc-ALOX12B-1
Location (hg19): chr17:7967151-7968061
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 266 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025555; NONHSAT145478
Alternative gene names: XLOC_012383; linc-TRAPPC1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 11.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALOX12B-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ALOX12B-1:1
3.1 lnc-ALOX12B-1:1
4.0 lnc-ALOX12B-1:1
4.1 lnc-ALOX12B-1:1
5.0 lnc-ALOX12B-1:1
5.1 lnc-YBX2-33:1
5.2 lnc-ALOX12B-1:1