Transcript: lnc-ALPK2-7:1

Basic information

LNCipedia transcript ID: lnc-ALPK2-7:1 
LNCipedia gene ID: lnc-ALPK2-7
Ensembl Gene ID: ENSG00000267501
Ensembl Transcript ID: ENST00000586383
Location (hg19): chr18:56422091-56425074
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 740 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT059527; ENST00000586383.1
Alternative gene names: ENSG00000267501.1; RP11-108P20.2; AC104365.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.3605 non-coding 
CPAT coding probability 6.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALPK2-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALPK2-7:1
4.0 lnc-ALPK2-7:1
4.1 lnc-ALPK2-7:1
5.0 lnc-ALPK2-7:1
5.1 lnc-MBD2-45:1
5.2 lnc-ALPK2-7:1