Transcript: lnc-ALX3-1:3

Basic information

LNCipedia transcript ID: lnc-ALX3-1:3 
LNCipedia gene ID: lnc-ALX3-1
Ensembl Gene ID: ENSG00000227091
Ensembl Transcript ID: ENST00000430098
Location (hg19): chr1:110708808-110709805
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 482 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000430098.1; RP5-1028L10.1-001; OTTHUMT00000032552.1; NONHSAT005098
Alternative gene names: ENSG00000227091.1; RP5-1028L10.1; OTTHUMG00000011762.1; AL355990.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 424.3916 coding 
CPAT coding probability 2.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ALX3-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALX3-1:3
4.0 lnc-ALX3-1:3
4.1 lnc-ALX3-1:3
5.0 lnc-ALX3-1:3
5.1 lnc-LAMTOR5-7:2
5.2 lnc-ALX3-1:3