Transcript: lnc-ALX3-4:2

Basic information

LNCipedia transcript ID: lnc-ALX3-4:2 
LNCipedia gene ID: lnc-ALX3-4
Location (hg19): chr1:110552609-110554074
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1060 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_110_chr1:110552608-110554074_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 155.4404 coding 
CPAT coding probability 2.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ALX3-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ALX3-4:2
4.0 lnc-ALX3-4:2
4.1 lnc-ALX3-4:2
5.0 lnc-ALX3-4:2
5.1 lnc-LAMTOR5-9:2
5.2 lnc-ALX3-4:2