Transcript: lnc-ALX4-5:3

Basic information

LNCipedia transcript ID: lnc-ALX4-5:3 
LNCipedia gene ID: lnc-ALX4-5
Ensembl Gene ID: ENSG00000246250
Ensembl Transcript ID: ENST00000524643
Location (hg19): chr11:43854605-43855492
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 704 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000524643; ENST00000524643.1; RP11-613D13.5-002; OTTHUMT00000390389.1; NONHSAT018955
Alternative gene names: ENSG00000246250; ENSG00000246250.2; RP11-613D13.5; OTTHUMG00000166552.1; AC087521.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -181.6597 non-coding 
CPAT coding probability 14.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ALX4-5:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ALX4-5:3
3.1 lnc-ALX4-5:3
4.0 lnc-ALX4-5:3
4.1 lnc-ALX4-5:3
5.0 lnc-ALX4-5:3
5.1 lnc-RAG2-28:5
5.2 lnc-ALX4-5:3