Transcript: lnc-AMELY-5:1

Basic information

LNCipedia transcript ID: lnc-AMELY-5:1 
LNCipedia gene ID: lnc-AMELY-5
Location (hg19): chrY:6124308-6131994
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2332 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000451062.1; FAM197Y9-002; OTTHUMT00000098301.1; NONHSAT139333
Alternative gene names: ENSG00000234830.2; FAM197Y9; OTTHUMG00000040945.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 26.952 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AMELY-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AMELY-5:1
4.0 lnc-AMELY-5:1
4.1 lnc-AMELY-5:1
5.0 lnc-AMELY-5:1
5.1 lnc-DAZ1-144:1
5.2 lnc-AMELY-5:1