Transcript: lnc-AMIGO1-2:5

Basic information

LNCipedia transcript ID: lnc-AMIGO1-2:5 
LNCipedia gene ID: lnc-AMIGO1-2
Location (hg19): chr1:110088558-110091131
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 762 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000070588.1|FTMT20100057386.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -186.4914 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AMIGO1-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AMIGO1-2:5
5.0 lnc-AMIGO1-2:5
5.1 lnc-LAMTOR5-17:4
5.2 lnc-AMIGO1-2:5