Transcript: lnc-AMIGO1-2:8

Basic information

LNCipedia transcript ID: lnc-AMIGO1-2:8 
LNCipedia gene ID: lnc-AMIGO1-2
Ensembl Gene ID: ENSG00000254942
Ensembl Transcript ID: ENST00000526411
Location (hg19): chr1:110082528-110086459
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 582 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000526411.1; RP5-1160K1.8-001; OTTHUMT00000385578.1; NONHSAT005042
Alternative gene names: ENSG00000254942.1; RP5-1160K1.8; OTTHUMG00000165650.1; AL355310.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 235.3815 coding 
CPAT coding probability 5.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-AMIGO1-2:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AMIGO1-1:1
4.0 lnc-AMIGO1-1:1
4.1 lnc-AMIGO1-2:8
5.0 lnc-AMIGO1-2:8
5.1 lnc-LAMTOR5-17:8
5.2 lnc-AMIGO1-2:8