Transcript: lnc-AMIGO2-9:1

Basic information

LNCipedia transcript ID: lnc-AMIGO2-9:1 
LNCipedia gene ID: lnc-AMIGO2-9
RefSeq ID: NR_135024
Location (hg19): chr12:47699700-47701182
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 845 bp
Exons: 2
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_135024.1
Alternative gene names: LOC105369747


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 66.4058 coding 
CPAT coding probability 15.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-AMIGO2-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-RPAP3-2:1
5.1 lnc-RPAP3-2:1
5.2 lnc-AMIGO2-9:1