Transcript: lnc-AMPH-4:1

Basic information

LNCipedia transcript ID: lnc-AMPH-4:1 
LNCipedia gene ID: lnc-AMPH-4
Location (hg19): chr7:38394799-38395026
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 228 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT120180; FPKM1_group_29568_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.4464 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AMPH-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AMPH-4:1
4.0 lnc-AMPH-4:1
4.1 lnc-AMPH-4:1
5.0 lnc-AMPH-4:1
5.1 lnc-SFRP4-4:1
5.2 lnc-AMPH-4:1