Transcript: lnc-AMY1B-1:5

Basic information

LNCipedia transcript ID: lnc-AMY1B-1:5 
LNCipedia gene ID: lnc-AMY1B-1
Ensembl Gene ID: ENSG00000224613
Ensembl Transcript ID: ENST00000444810
Location (hg19): chr1:103960701-104068105
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 527 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000594; ENST00000444810.1; RP11-153F1.1-001; OTTHUMT00000099062.1; NONHSAT004891; ENST00000444810.5
Alternative gene names: XLOC_000945; linc-COL11A1; ENSG00000224613.1; RP11-153F1.1; OTTHUMG00000041348.1; ENSG00000224613.2; ENSG00000224613.6; AC095032.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -34.005 non-coding 
CPAT coding probability 8.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AMY1B-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COL11A1-2:5
3.1 lnc-AMY1B-1:5
4.0 lnc-AMY1B-1:5
4.1 lnc-AMY1B-1:5
5.0 lnc-AMY1B-1:5
5.1 lnc-EXTL2-25:8
5.2 lnc-AMY1B-1:5