Transcript: lnc-ANKH-2:1

Basic information

LNCipedia transcript ID: lnc-ANKH-2:1 
LNCipedia gene ID: lnc-ANKH-2
Ensembl Gene ID: ENSG00000249332
Ensembl Transcript ID: ENST00000502680
Location (hg19): chr5:15112486-15117116
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 822 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009608; ENST00000502680; ENST00000502680.1; RP1-251I12.1-001; OTTHUMT00000366110.1; NONHSAT100577
Alternative gene names: XLOC_004739; linc-ANKH-3; ENSG00000249332; RP1-251I12.1; ENSG00000249332.1; OTTHUMG00000161792.1; AC016651.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -132.142 non-coding 
CPAT coding probability 9.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANKH-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKH-1:1
3.1 lnc-ANKH-2:1
4.0 lnc-ANKH-2:1
4.1 lnc-ANKH-2:1
5.0 lnc-ANKH-2:1
5.1 lnc-CDH12-65:1
5.2 lnc-ANKH-2:1