Transcript: lnc-ANKRD20A2-1:19

Basic information

LNCipedia transcript ID: lnc-ANKRD20A2-1:19 
LNCipedia gene ID: lnc-ANKRD20A2-1
Ensembl Gene ID: ENSG00000225655
Ensembl Transcript ID: ENST00000613309
Location (hg19): chr9:69146939-69149621
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 681 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000416700; ENST00000416700.1; RP11-58A12.3-001; OTTHUMT00000129825.1; NONHSAT131648; ENST00000613309.4
Alternative gene names: ENSG00000237543; RP11-58A12.3; ENSG00000237543.1; OTTHUMG00000058670.1; ENSG00000225655.5; PGM5-AS1; BX255923.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -44.9777 non-coding 
CPAT coding probability 2.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANKRD20A2-1:19 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BX255923.1-1:1
3.1 lnc-BX255923.1-1:1
4.0 lnc-BX255923.1-1:1
4.1 lnc-BX255923.1-1:1
5.0 lnc-BX255923.1-1:1
5.1 lnc-DCAF10-46:1
5.2 lnc-ANKRD20A2-1:19