Transcript: lnc-ANKRD30B-5:1

Basic information

LNCipedia transcript ID: lnc-ANKRD30B-5:1 
LNCipedia gene ID: lnc-ANKRD30B-5
Ensembl Gene ID: ENSG00000263821
Ensembl Transcript ID: ENST00000583306
Location (hg19): chr18:14978738-14979838
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1101 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000583306.1; RP11-527H14.1-001; OTTHUMT00000443407.1; NONHSAT058546
Alternative gene names: ENSG00000263821.1; RP11-527H14.1; OTTHUMG00000178813.1; AP005121.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.485 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANKRD30B-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKRD30B-5:1
4.0 lnc-ANKRD30B-5:1
4.1 lnc-ANKRD30B-5:1
5.0 lnc-ANKRD30B-5:1
5.1 lnc-RIOK3-88:1
5.2 lnc-ANKRD30B-5:1