Transcript: lnc-ANKRD30BL-1:1

Basic information

LNCipedia transcript ID: lnc-ANKRD30BL-1:1 
LNCipedia gene ID: lnc-ANKRD30BL-1
Ensembl Gene ID: ENSG00000230803
Ensembl Transcript ID: ENST00000440802
Location (hg19): chr2:133043368-133051950
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 322 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003407; ENST00000440802; ENST00000440802.1; AC097532.2-001; OTTHUMT00000331805.1; NONHSAT074525
Alternative gene names: XLOC_002329; linc-C2orf27B-5; ENSG00000230803; AC097532.2; ENSG00000230803.1; OTTHUMG00000153603.1; AC097532.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.2677 non-coding 
CPAT coding probability 6.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANKRD30BL-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKRD30BL-1:1
3.1 lnc-ANKRD30BL-1:1
4.0 lnc-ANKRD30BL-1:1
4.1 lnc-ANKRD30BL-1:1
5.0 lnc-ANKRD30BL-1:1
5.1 lnc-PRSS40B-46:1
5.2 lnc-ANKRD30BL-1:1