Transcript: lnc-ANKRD36-2:1

Basic information

LNCipedia transcript ID: lnc-ANKRD36-2:1 
LNCipedia gene ID: lnc-ANKRD36-2
Location (hg19): chr2:98086678-98100408
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 592 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00002947; ENST00000480208; ENST00000480208.1; AC159540.2-001; OTTHUMT00000328939.1; NONHSAT072639
Alternative gene names: XLOC_001584; linc-COX5B-2; ENSG00000241481; AC159540.2; ENSG00000241481.1; OTTHUMG00000153001.1; ENSG00000241481.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.0736 non-coding 
CPAT coding probability 5.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANKRD36-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKRD36-2:1
3.1 lnc-ANKRD36-2:1
4.0 lnc-ANKRD36-2:1
4.1 lnc-ANKRD36-2:1
5.0 lnc-ANKRD36-2:1
5.1 lnc-SLC9A4-93:2
5.2 lnc-ANKRD36-2:1