Transcript: lnc-ANKRD55-1:1

Basic information

LNCipedia transcript ID: lnc-ANKRD55-1:1 
LNCipedia gene ID: lnc-ANKRD55-1
Ensembl Gene ID: ENSG00000249697
Ensembl Transcript ID: ENST00000504349
Location (hg19): chr5:55609732-55617224
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1227 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009667; ENST00000504349; ENST00000504349.1; RP11-155L15.1-001; OTTHUMT00000368509.1; NONHSAT101535
Alternative gene names: XLOC_004828; linc-ANKRD55-5; ENSG00000249697; RP11-155L15.1; ENSG00000249697.1; OTTHUMG00000162304.1; AC034245.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.3008 non-coding 
CPAT coding probability 4.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANKRD55-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKRD55-1:1
3.1 lnc-ANKRD55-1:1
4.0 lnc-ANKRD55-1:1
4.1 lnc-ANKRD55-1:1
5.0 lnc-ANKRD55-1:1
5.1 lnc-ACTBL2-18:1
5.2 lnc-ANKRD55-1:1