Transcript: lnc-ANKRD60-2:1

Basic information

LNCipedia transcript ID: lnc-ANKRD60-2:1 
LNCipedia gene ID: lnc-ANKRD60-2
Ensembl Gene ID: ENSG00000225708
Ensembl Transcript ID: ENST00000452842
Location (hg19): chr20:56644110-56647126
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 744 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028076; ENST00000452842; ENST00000452842.1; RP13-379L11.1-002; OTTHUMT00000079863.1
Alternative gene names: XLOC_013817; linc-PMEPA1-2; ENSG00000225708; RP13-379L11.1; ENSG00000225708.1; OTTHUMG00000032833.2; ENSG00000225708.2; ENSG00000225708.6; AL354984.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.3774 non-coding 
CPAT coding probability 42.68% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ANKRD60-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKRD60-2:1
3.1 lnc-ANKRD60-2:1
4.0 lnc-ANKRD60-2:1
4.1 lnc-ANKRD60-2:1
5.0 lnc-ANKRD60-2:1
5.1 lnc-SPATA2-99:1
5.2 lnc-ANKRD60-2:1