Transcript: lnc-ANKRD60-2:2

Basic information

LNCipedia transcript ID: lnc-ANKRD60-2:2 
LNCipedia gene ID: lnc-ANKRD60-2
Location (hg19): chr20:56644110-56647116
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1012 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: TCONS_00028075; ENST00000441277; ENST00000441277.1; RP13-379L11.1-001; OTTHUMT00000079862.2
Alternative gene names: XLOC_013817; linc-PMEPA1-2; ENSG00000225708; RP13-379L11.1; ENSG00000225708.1; OTTHUMG00000032833.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.3774 non-coding 
CPAT coding probability 47.95% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ANKRD60-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKRD60-2:2
3.1 lnc-ANKRD60-2:2
4.0 lnc-ANKRD60-2:2
4.1 lnc-ANKRD60-2:2
5.0 lnc-ANKRD60-2:2
5.1 lnc-SPATA2-99:2
5.2 lnc-ANKRD60-2:2