Transcript: lnc-ANKS4B-5:11

Basic information

LNCipedia transcript ID: lnc-ANKS4B-5:11 
LNCipedia gene ID: lnc-ANKS4B-5
Location (hg19): chr16:21314568-21329912
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2028 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000444326; ENST00000444326.1; CRYM-AS1-002; OTTHUMT00000345335.1; NONHSAT140973
Alternative gene names: ENSG00000189149; NCRNA00169; ENSG00000189149.7; CRYM-AS1; OTTHUMG00000156701.2; ENSG00000189149.11; FLJ41766


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.9868 non-coding 
CPAT coding probability 26.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANKS4B-5:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKS4B-1:2
3.1 lnc-ANKS4B-1:3
4.0 CRYM-AS1:4
4.1 CRYM-AS1:4
5.0 CRYM-AS1:4
5.1 lnc-TMC5-34:11
5.2 lnc-ANKS4B-5:11