Transcript: lnc-ANKS4B-5:3

Basic information

LNCipedia transcript ID: lnc-ANKS4B-5:3 
LNCipedia gene ID: lnc-ANKS4B-5
Location (hg19): chr16:21312202-21328207
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 559 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000561968.1; CRYM-AS1-003; OTTHUMT00000430008.1; NONHSAT140972; ENST00000561968.5
Alternative gene names: ENSG00000189149.7; CRYM-AS1; OTTHUMG00000156701.2; ENSG00000189149.11; FLJ41766


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.5902 non-coding 
CPAT coding probability 14.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANKS4B-5:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKS4B-1:2
4.0 CRYM-AS1:3
4.1 CRYM-AS1:3
5.0 CRYM-AS1:3
5.1 lnc-TMC5-34:3
5.2 lnc-ANKS4B-5:3