Transcript: lnc-ANLN-3:1

Basic information

LNCipedia transcript ID: lnc-ANLN-3:1 
LNCipedia gene ID: lnc-ANLN-3
Ensembl Gene ID: ENSG00000235728
Ensembl Transcript ID: ENST00000415356
Location (hg19): chr7:36820613-36822394
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 872 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00012996; ENST00000415356; ENST00000415356.1; AC007349.5-001; OTTHUMT00000337765.1; NONHSAT120137
Alternative gene names: XLOC_006049; linc-GPR141-3; ENSG00000235728; AC007349.5; ENSG00000235728.1; OTTHUMG00000154944.1; AC007349.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.5125 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANLN-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANLN-3:1
3.1 lnc-ANLN-3:1
4.0 lnc-ANLN-3:1
4.1 lnc-ANLN-3:1
5.0 lnc-ANLN-3:1
5.1 lnc-CCDC129-57:2
5.2 lnc-ANLN-3:1