Transcript: lnc-ANO10-2:1

Basic information

LNCipedia transcript ID: lnc-ANO10-2:1 
LNCipedia gene ID: lnc-ANO10-2
Ensembl Gene ID: ENSG00000235886
Ensembl Transcript ID: ENST00000432423
Location (hg19): chr3:43820453-43821474
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 411 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005768; ENST00000432423; ENST00000432423.1; RP4-672N11.1-001; OTTHUMT00000344437.1; NONHSAT089296
Alternative gene names: XLOC_003103; linc-ANO10-1; ENSG00000235886; RP4-672N11.1; ENSG00000235886.1; OTTHUMG00000156509.1; AC006055.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.0028 non-coding 
CPAT coding probability 2.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANO10-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANO10-2:1
3.1 lnc-ANO10-2:1
4.0 lnc-ANO10-2:1
4.1 lnc-ANO10-2:1
5.0 lnc-ANO10-2:1
5.1 lnc-HIGD1A-6:1
5.2 lnc-ANO10-2:1