Transcript: lnc-ANO2-1:1

Basic information

LNCipedia transcript ID: lnc-ANO2-1:1 
LNCipedia gene ID: lnc-ANO2-1
Ensembl Gene ID: ENSG00000256218
Ensembl Transcript ID: ENST00000543308
Location (hg19): chr12:5475214-5476940
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1727 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000543308; ENST00000543308.1; RP11-1038A11.2-001; OTTHUMT00000400481.1; NONHSAT026000
Alternative gene names: ENSG00000256218; RP11-1038A11.2; ENSG00000256218.1; OTTHUMG00000168647.1; AC007848.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.2631 non-coding 
CPAT coding probability 43.98% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ANO2-1:1 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANO2-1:1
3.1 lnc-ANO2-1:1
4.0 lnc-ANO2-1:1
4.1 lnc-ANO2-1:1
5.0 lnc-ANO2-1:1
5.1 lnc-CHD4-60:1
5.2 lnc-ANO2-1:1