Transcript: lnc-ANO3-3:2

Basic information

LNCipedia transcript ID: lnc-ANO3-3:2 
LNCipedia gene ID: lnc-ANO3-3
Ensembl Gene ID: ENSG00000254456
Ensembl Transcript ID: ENST00000533049
Location (hg19): chr11:25756317-25803305
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 568 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000533049; ENST00000533049.1; RP11-405K6.1-001; OTTHUMT00000387792.1; NONHSAT018452; ENST00000533049.5
Alternative gene names: ENSG00000254456; RP11-405K6.1; ENSG00000254456.1; OTTHUMG00000166089.1; ENSG00000254456.5; AC090592.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.6914 non-coding 
CPAT coding probability 2.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANO3-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANO3-2:1
3.1 lnc-ANO3-3:2
4.0 lnc-ANO3-3:2
4.1 lnc-ANO3-3:2
5.0 lnc-ANO3-3:2
5.1 lnc-QSER1-66:1
5.2 lnc-ANO3-3:2