Transcript: lnc-ANXA2R-1:13

Basic information

LNCipedia transcript ID: lnc-ANXA2R-1:13 
LNCipedia gene ID: lnc-ANXA2R-1
RefSeq ID: NR_034127
Location (hg19): chr5:43065289-43067073
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1785 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT101276; NR_034127; NR_034127.1
Alternative gene names: LOC100132356


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.8136 non-coding 
CPAT coding probability 24.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANXA2R-1:13 no no no no

Available literature

  1. Gu (2015), Aberrant expression of long noncoding RNAs in chronic thromboembolic pulmonary hypertension., Mol Med Rep
  2. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C5orf39-1:13
4.0 lnc-C5orf39-1:13
4.1 lnc-C5orf39-1:13
5.0 lnc-C5orf39-1:13
5.1 lnc-SELENOP-8:13
5.2 lnc-ANXA2R-1:13