Transcript: lnc-ANXA2R-1:19

Basic information

LNCipedia transcript ID: lnc-ANXA2R-1:19 
LNCipedia gene ID: lnc-ANXA2R-1
RefSeq ID: NR_034085
Location (hg19): chr5:43016150-43018913
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2764 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT101258; NR_034085; NR_034085.1
Alternative gene names: LOC648987


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.2322 non-coding 
CPAT coding probability 5.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANXA2R-1:19 no no no no

Available literature

  1. Gu (2015), Aberrant expression of long noncoding RNAs in chronic thromboembolic pulmonary hypertension., Mol Med Rep
  2. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C5orf39-1:16
4.0 lnc-C5orf39-1:16
4.1 lnc-C5orf39-1:16
5.0 lnc-C5orf39-1:16
5.1 lnc-SELENOP-8:19
5.2 lnc-ANXA2R-1:19