Transcript: lnc-ANXA2R-1:33

Basic information

LNCipedia transcript ID: lnc-ANXA2R-1:33 
LNCipedia gene ID: lnc-ANXA2R-1
Location (hg19): chr5:42985555-42991348
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 536 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010321; NONHSAT101243
Alternative gene names: XLOC_004803; linc-SEPP1-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.3788 non-coding 
CPAT coding probability 3.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANXA2R-1:33 no no no no

Available literature

  1. Gu (2015), Aberrant expression of long noncoding RNAs in chronic thromboembolic pulmonary hypertension., Mol Med Rep
  2. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C5orf39-2:4
3.1 lnc-C5orf39-2:4
4.0 lnc-C5orf39-2:4
4.1 lnc-C5orf39-1:32
5.0 lnc-C5orf39-1:32
5.1 lnc-SELENOP-8:33
5.2 lnc-ANXA2R-1:33