Transcript: lnc-ANXA2R-1:4

Basic information

LNCipedia transcript ID: lnc-ANXA2R-1:4 
LNCipedia gene ID: lnc-ANXA2R-1
Location (hg19): chr5:43066931-43067560
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 490 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010928; NONHSAT101279
Alternative gene names: XLOC_004805; linc-C5orf39


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.2758 non-coding 
CPAT coding probability 1.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANXA2R-1:4 no no no no

Available literature

  1. Gu (2015), Aberrant expression of long noncoding RNAs in chronic thromboembolic pulmonary hypertension., Mol Med Rep
  2. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C5orf39-1:3
3.1 lnc-C5orf39-1:3
4.0 lnc-C5orf39-1:3
4.1 lnc-C5orf39-1:3
5.0 lnc-C5orf39-1:3
5.1 lnc-SELENOP-8:4
5.2 lnc-ANXA2R-1:4