Transcript: lnc-AP1S2-1:1

Basic information

LNCipedia transcript ID: lnc-AP1S2-1:1 
LNCipedia gene ID: lnc-AP1S2-1
Location (hg19): chrX:15801328-15802658
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 675 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000463076.1; CA5B-AS1-001; OTTHUMT00000354932.1; NONHSAT136362
Alternative gene names: ENSG00000240178.1; CA5B-AS1; OTTHUMG00000159359.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -249.8008 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AP1S2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP1S2-1:1
4.0 lnc-AP1S2-1:1
4.1 lnc-AP1S2-1:1
5.0 lnc-AP1S2-1:1
5.1 lnc-PCSK1N-182:1
5.2 lnc-AP1S2-1:1