Transcript: lnc-AP1S2-2:3

Basic information

LNCipedia transcript ID: lnc-AP1S2-2:3 
LNCipedia gene ID: lnc-AP1S2-2
Ensembl Gene ID: ENSG00000238178
Ensembl Transcript ID: ENST00000422438
Location (hg19): chrX:16171064-16175952
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 392 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422438.1; RP11-431J24.2-002; OTTHUMT00000055899.2; NONHSAT136369; ENST00000422438.5
Alternative gene names: ENSG00000238178.1; RP11-431J24.2; OTTHUMG00000021187.2; ENSG00000238178.2; ENSG00000238178.6; AC078993.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -227.8967 non-coding 
CPAT coding probability 1.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AP1S2-2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP1S2-2:3
4.0 lnc-AP1S2-2:3
4.1 lnc-AP1S2-2:3
5.0 lnc-AP1S2-2:3
5.1 lnc-PCSK1N-179:7
5.2 lnc-AP1S2-2:3