Transcript: lnc-AP1S2-2:6

Basic information

LNCipedia transcript ID: lnc-AP1S2-2:6 
LNCipedia gene ID: lnc-AP1S2-2
Location (hg19): chrX:16171652-16202183
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 12019 bp
Exons: 6
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000238178.2|ENCT00000475095.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 10.1907 non-coding 
CPAT coding probability 26.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AP1S2-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AP1S2-2:6
5.0 lnc-AP1S2-2:6
5.1 lnc-PCSK1N-179:1
5.2 lnc-AP1S2-2:6