Transcript: lnc-AP3S1-2:3

Basic information

LNCipedia transcript ID: lnc-AP3S1-2:3 
LNCipedia gene ID: lnc-AP3S1-2
Ensembl Gene ID: ENSG00000248709
Ensembl Transcript ID: ENST00000512900
Location (hg19): chr5:115091341-115091983
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 643 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000512900; ENST00000512900.1; CTC-505O3.2-001; OTTHUMT00000372267.1; NONHSAT103322
Alternative gene names: ENSG00000248709; CTC-505O3.2; ENSG00000248709.1; OTTHUMG00000163233.1; AC008549.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -104.1477 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AP3S1-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AP3S1-2:3
3.1 lnc-AP3S1-2:3
4.0 lnc-AP3S1-2:3
4.1 lnc-AP3S1-2:3
5.0 lnc-AP3S1-2:3
5.1 lnc-AP3S1-2:3
5.2 lnc-AP3S1-2:3