Transcript: lnc-AP3S1-4:6

Basic information

LNCipedia transcript ID: lnc-AP3S1-4:6 
LNCipedia gene ID: lnc-AP3S1-4
RefSeq ID: NR_109875
Location (hg19): chr5:114937852-114956116
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 769 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109875; NR_109875.1
Alternative gene names: LOC101927100


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -310.9099 non-coding 
CPAT coding probability 8.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AP3S1-4:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP3S1-4:6
4.0 lnc-AP3S1-4:6
4.1 lnc-AP3S1-4:6
5.0 lnc-AP3S1-4:6
5.1 lnc-AP3S1-4:6
5.2 lnc-AP3S1-4:6