Transcript: lnc-AP4S1-1:2

Basic information

LNCipedia transcript ID: lnc-AP4S1-1:2 
LNCipedia gene ID: lnc-AP4S1-1
Location (hg19): chr14:31959233-31995393
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 213 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00022458; NONHSAT036284
Alternative gene names: XLOC_010789; linc-NUBPL-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.4046 non-coding 
CPAT coding probability 0.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AP4S1-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AP4S1-1:1
3.1 lnc-AP4S1-2:1
4.0 lnc-RP11-187E13.1.1-1:3
4.1 lnc-RP11-187E13.1.1-1:3
5.0 lnc-RP11-187E13.1.1-1:3
5.1 lnc-SCFD1-12:1
5.2 lnc-AP4S1-1:2