Transcript: lnc-APCDD1L-3:2

Basic information

LNCipedia transcript ID: lnc-APCDD1L-3:2 
LNCipedia gene ID: lnc-APCDD1L-3
Location (hg19): chr20:57226241-57227379
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1139 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000055334.1|FTMT27800002419.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -18.6891 non-coding 
CPAT coding probability 1.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APCDD1L-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-APCDD1L-3:2
5.0 lnc-APCDD1L-3:2
5.1 lnc-SPATA2-108:1
5.2 lnc-APCDD1L-3:2